Modules / Lectures
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Sl.No Chapter Name MP4 Download Transcript Download
1Lecture 1 : Proteogenomics overview-IDownloadDownload
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2Lecture 2 : Proteogenomics overview-IIDownloadDownload
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3Lecture 3 : Introduction to Genomics - Part I: Gene sequencing and mutationsDownloadDownload
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4Lecture 4 : Introduction to Genomics - Part II: Sequence AlignmentDownloadDownload
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5Lecture 5 : Introduction to Genomics - Part III: TranscriptomeDownloadDownload
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6Supplementary Lecture 1 : Perspectives in Proteogenomics - IDownloadPDF unavailable
7Supplementary Lecture 2 : Advancement in Cancer GenomicsDownloadPDF unavailable
8Lecture 6 : Introduction to Genomics - Part IV: EpigenomeDownloadPDF unavailable
9Lecture 7 : Introduction to Genomics: cBioPortal DownloadPDF unavailable
10Lecture 8 : Genotype, Gene expression & Phenotype - IDownloadPDF unavailable
11Lecture 9 : Genotype, Gene expression & Phenotype - IIDownloadPDF unavailable
12Lecture 10 : An overview of NGS technologyDownloadPDF unavailable
13Supplementary Lecture 3 : NGS-Sequencing by synthesis - IDownloadPDF unavailable
14Supplementary Lecture 4 : NGS- Sequencing by synthesis - IIDownloadPDF unavailable
15Lecture 11 : Introduction to ProteomicsDownloadPDF unavailable
16Lecture 12 : Proteomics: Sample Prep & Protein QuantificationDownloadPDF unavailable
17Lecture 13 : Applications of ProteomicsDownloadPDF unavailable
18Lecture 14 : Introduction to MS-based Proteomics - IDownloadPDF unavailable
19Lecture 15 : Introduction to MS-based Proteomics - IIDownloadPDF unavailable
20Supplementary Lecture 5 : Applications of NGS – IonTorrentDownloadPDF unavailable
21Supplementary Lecture 6 : Genomic Analysis using Droplet PCR - IDownloadPDF unavailable
22Lecture 16 : Introduction to MS-based Proteomics - I (Hands-on session)DownloadPDF unavailable
23Lecture 17 : Introduction to MS-based Proteomics- II (Hands-on session)DownloadPDF unavailable
24Lecture 18 : Data analysis: NormalizationDownloadPDF unavailable
25Lecture 19 : Data analysis: Batch Correction and Missing valuesDownloadPDF unavailable
26Lecture 20 : Data analysis: Statistical TestDownloadPDF unavailable
27Supplementary Lecture 7 : Genomic Analysis using Droplet PCR - IIDownloadPDF unavailable
28Supplementary Lecture 8 : Topics in Proteogenomics: Malaria case studyDownloadPDF unavailable
29Lecture 21 : Machine learning and ClusteringDownloadPDF unavailable
30Lecture 22 : Hypothesis testingDownloadPDF unavailable
31Lecture 23 : ProTIGY - IDownloadPDF unavailable
32Lecture 24 : ProTIGY - IIDownloadPDF unavailable
33Lecture 25 : Proteomics Data AnalysisDownloadPDF unavailable
34Supplementary Lecture 9 : Proteomics Lab Demonstration IDownloadPDF unavailable
35Supplementary Lecture 10 : Proteomics Lab Demonstration IIDownloadPDF unavailable
36Lecture 26 : Workflow to Automated Data ProcessingDownloadPDF unavailable
37Lecture 27 : Introduction to Fire CloudDownloadPDF unavailable
38Lecture 28 : FireCloud and Data ModelDownloadPDF unavailable
39Lecture 29 : Bioinformatics solutions for ‘Big Data’ Analysis - IDownloadPDF unavailable
40Lecture 30 : Bioinformatics solutions for ‘Big Data’ Analysis - IIDownloadPDF unavailable
41Supplementary Lecture 11 : Introduction to Targeted ProteomicsDownloadPDF unavailable
42Supplementary Lecture 12 : Data analysis using SkylineDownloadPDF unavailable
43Lecture 31 : Large-scale data Science - IDownloadPDF unavailable
44Lecture 32 : Large-scale data Science - IIDownloadPDF unavailable
45Lecture 33 : Large-scale data Science - IIIDownloadPDF unavailable
46Lecture 34 : DIA-SWATH Atlas - IDownloadPDF unavailable
47Lecture 35 : DIA-SWATH Atlas - IIDownloadPDF unavailable
48Supplementary Lecture 13 : Prediction AnalysisDownloadPDF unavailable
49Supplementary Lecture 14 : Pathway Enrichment and Network AnalysisDownloadPDF unavailable
50Lecture 36 : Human Protein Atlas - IDownloadPDF unavailable
51Lecture 37 : Human Protein Atlas - IIDownloadPDF unavailable
52Lecture 38 : Affinity based proteomics & HPADownloadPDF unavailable
53Lecture 39 : Clinical Considerations for OMICS - IDownloadPDF unavailable
54Lecture 40 : Clinical Considerations for OMICS - IIDownloadPDF unavailable
55Supplementary Lecture 15 : Topics in Proteogenomics: Cancer case studyDownloadPDF unavailable
56Supplementary Lecture 16 : Integrative Genomics Viewer (IGV)DownloadPDF unavailable
57Lecture 41 : Introduction to Proteogenomics - IDownloadPDF unavailable
58Lecture 42 : Introduction to Proteogenomics - IIDownloadPDF unavailable
59Lecture 43 : Sequence centric proteogenomicsDownloadPDF unavailable
60Lecture 44 : Variant AnalysisDownloadPDF unavailable
61Lecture 45 : Proteomics: Clinical Applications DownloadPDF unavailable
62Supplementary Lecture 17 : Perspectives in Proteogenomics IIDownloadPDF unavailable
63Lecture 46 : Predictive Analysis - IDownloadPDF unavailable
64Lecture 47 : Predictive Analysis - IIDownloadPDF unavailable
65Lecture 48 : Association/ Marker SelectionDownloadPDF unavailable
66Lecture 49 : WebGestalt - IDownloadPDF unavailable
67Lecture 50 : WebGestalt - IIDownloadPDF unavailable
68Supplementary Lecture 18: Perspectives in Proteogenomics IIIDownloadPDF unavailable
69Lecture 51 : Network Analysis - IDownloadPDF unavailable
70Lecture 52 : Network Analysis - IIDownloadPDF unavailable
71Lecture 53 : Mutation and Signaling - IDownloadPDF unavailable
72Lecture 54 : Mutations and Signaling - IIDownloadPDF unavailable
73Lecture 55 : Pathway Enrichment - IDownloadPDF unavailable
74Supplementary Lecture 19 : Perspectives in Proteogenomics IVDownloadPDF unavailable
75Lecture 56 : Pathway Enrichment - IIDownloadPDF unavailable
76Lecture 57 : Sequence - GSEADownloadPDF unavailable
77Lecture 58 : Linked Omics - IDownloadPDF unavailable
78Lecture 59 : Linked Omics - IIDownloadPDF unavailable
79Lecture 60 : Proteogenomics: Opportunities and ChallengesDownloadPDF unavailable
80Supplementary Lecture 20 : Perspectives in Proteogenomics VDownloadPDF unavailable